Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015817998.1_cds_XP_016499409.1_13338
CDS Infomation

[gene=LOC107818015] [db_xref=GeneID:107818015] [protein=probable indole-3-acetic acid-amido synthetase GH3.1] [protein_id=XP_016499409.1] [location=complement(join(40826..42191,42316..42417,42672..42991))] [gbkey=CDS]
Sequence

ATGGCTGTTGATTCGGTACTATCATCACCATTGGGTCCTCCTGCATGTGAGAAAGACGCA
AAGGCACTTCAATTCATCGAAGAGATGACTAGAAATGCTGATGCCGTCCAAGAAAGAGTC
TTGAATGAGATATTGACTCGAAACTCACAAACTGAGTACCTTAAGCGCTTTAAACTTGAC
GGCGTCAGTGACCGTGAAACTTTTAAGAACAAAATTCCGGTCGTAACTTACGAAGATCTT
CAGCCTGAGATCCAACGGATTGCTAACGGCGACCGTTCTCCTATCCTATCTGCTCATCCC
ATCTCTGAATTCCTCACTAGCTCTGGAACGTCAGCTGGCGAAAGGAAACTCATGCCAACA
ATTAAAGAAGAGTTGGATCGTCGCCAGCTACTTTACAGTCTTCTTATGCCTGTTATGAAC
CTGTACGTGCCTGGATTAGACAAAGGCAAAGGACTATACTTCTTATTTATCAAGTCCGAG
ACGAAAACGCCTGGTGGGCTATTAGCAAGACCAGTACTCACAAGCTATTACAAAAGCGAA
CATTTCAAAAGAAGACCACATGACCCCTACAATGTTTACACCAGCCCAAATGAGGCCATC
CTGTGTGCAGACTCATTTCAGAGTATGTACACTCAAATGCTCTGCGGTCTTTACGAGCGC
GAGCAAGTTCTTCGCCTTGGTGCGGTCTTTGCCTCGGGCCTTGTCCGAGCTATTCGGTTC
TTGCAACTCCATTGGCCACAGCTTGCTCATGACATTCGAACCGGGACTCTGAACCCCGAA
ATTACCGACCCCTCAATTTGTGAACGCATGGGTCTTGTTATGAGACCAAATCCAAAGCTA
GCCGATTTTGTTACCGATGAATGTTCTAAGGAAAATTGGGAAGGAATCATCACGAGAATT
TGGCCTAAGACTAAGTACCTTGACGTAATTGTCACGGGTGCTATGGCTCAATATATTCCT
ACTCTGGATTATTACAGTGGTGGATTACCAAAAGCGTGTACTATGTACGCAGCTTCCGAG
TGTTACTTTGGACTCAATTTAAATCCCATGTGTAAGCCCTCGGAAGTTTCGTACACAATC
ATGCCAAACATGGGTTATTTTGAATTCTTACCACATGACCCTAACTCATCCCGTGACTCA
ACTCGTAATCTTGTTGACCTTGTTGACGTTGAAGTTGGAAAAGAGTACGAACTTGTCATC
ACGACTTACGCGGGATTATACCGTTACAGAGTCGGTGATATACTCCGGGTTACAGGGTTT
CATAACTCAGCGCCGCAGTTCCATTTCGTGAGGAGAAAAAATGTTCTATTGAGCATTGAT
TCGGACAAGACGGACGAGGCCGAATTACAGAGAGCCGTGGAAAATGCTTCAAAACTTCTT
AAGGAATTCAACACTAGCGTGGTGGAGTACACTAGTTATGCAGATACAAAGACAATTCCT
GGTCATTACGTGATTTATTGGGAGTTATTAATGAAGGATTTAAACAATTCTCCTAGTGAT
GAAGTTTTGAACAAGTGTTGTTTGGCCATGGAAGAGTCACTCAACACAGTGTACAGACAA
GGACGAGTTGCTTGCAATTCAATTGGTCCATTGGAGATTAGAGTGGTGAAAAATGGCACA
TTTGAAGAATTAATGGATTATGCAATTTCAAGGGGTGCTTCAATTAACCAATATAAGGTG
CCAAGATGTGTTAGTTTTGCACCTATTTTGGAACTTCTTGACTCAAGAGTAATGTCAAGA
CACTTTAGCCCATCGTTGCCTCAATGGACACCTGAACGGCGTCATTGA

Peptide Sequence

PEP ID

XP_016499409.1
PEP Infomation

PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Nicotiana tabacum]
Sequence

MAVDSVLSSPLGPPACEKDAKALQFIEEMTRNADAVQERVLNEILTRNSQTEYLKRFKLD
GVSDRETFKNKIPVVTYEDLQPEIQRIANGDRSPILSAHPISEFLTSSGTSAGERKLMPT
IKEELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFIKSETKTPGGLLARPVLTSYYKSE
HFKRRPHDPYNVYTSPNEAILCADSFQSMYTQMLCGLYEREQVLRLGAVFASGLVRAIRF
LQLHWPQLAHDIRTGTLNPEITDPSICERMGLVMRPNPKLADFVTDECSKENWEGIITRI
WPKTKYLDVIVTGAMAQYIPTLDYYSGGLPKACTMYAASECYFGLNLNPMCKPSEVSYTI
MPNMGYFEFLPHDPNSSRDSTRNLVDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGF
HNSAPQFHFVRRKNVLLSIDSDKTDEAELQRAVENASKLLKEFNTSVVEYTSYADTKTIP
GHYVIYWELLMKDLNNSPSDEVLNKCCLAMEESLNTVYRQGRVACNSIGPLEIRVVKNGT
FEELMDYAISRGASINQYKVPRCVSFAPILELLDSRVMSRHFSPSLPQWTPERRH

Transcript Sequence

Gene sequence data has not been registered.